Remove files with ~
This commit is contained in:
@@ -1,166 +0,0 @@
|
|||||||
#
|
|
||||||
#
|
|
||||||
# This is the config file of the 'Advanced SCALA contact sheets' tool
|
|
||||||
#
|
|
||||||
# Don't make any changes
|
|
||||||
#
|
|
||||||
|
|
||||||
|
|
||||||
Last directory: /media/cle/Daten/Data/X -- 2012/rawdata/sample_Brice/NaCl_C60_01june2012p2
|
|
||||||
PDF Path:
|
|
||||||
|
|
||||||
|
|
||||||
Parameters
|
|
||||||
==========
|
|
||||||
Rows : 6
|
|
||||||
Columns : 4
|
|
||||||
Rms : 1.3
|
|
||||||
Image resolution : 100
|
|
||||||
Jpeg quality : 40
|
|
||||||
X text position : 0
|
|
||||||
Y text position : 0
|
|
||||||
Text size : 13
|
|
||||||
Dx of text : 0
|
|
||||||
Font : FreeSans
|
|
||||||
Date : 1
|
|
||||||
Size in nm : 1
|
|
||||||
Size in px : 1
|
|
||||||
Offset : 1
|
|
||||||
Voltage : 1
|
|
||||||
Feedback : 1
|
|
||||||
Gain : 1
|
|
||||||
Speed : 1
|
|
||||||
Amplitude : 1
|
|
||||||
Angle : 1
|
|
||||||
Deleting thumbs before : 0
|
|
||||||
Deleting thumbs after : 0
|
|
||||||
Extra directories : 0
|
|
||||||
Replace pdfs : 1
|
|
||||||
Subdirs : 1
|
|
||||||
Spektral Options : 1
|
|
||||||
Format Options : 0
|
|
||||||
Peek Options : 0
|
|
||||||
Minimum on zero Options: 0
|
|
||||||
Master directory :
|
|
||||||
Filename :
|
|
||||||
Color : ReiGreen
|
|
||||||
File extension : _noline
|
|
||||||
Direction : 0
|
|
||||||
Linefit : 3
|
|
||||||
Planefit : 3
|
|
||||||
AddChannel : 17
|
|
||||||
ChannelNumber : 3
|
|
||||||
Tooltips : 0
|
|
||||||
Channelname 1 : FN
|
|
||||||
Channelname 2 : FL
|
|
||||||
Channelname 3 : I
|
|
||||||
Thumb 1 : 1
|
|
||||||
Thumb 2 : 1
|
|
||||||
Thumb 3 : 1
|
|
||||||
Thumb 4 : 1
|
|
||||||
Thumb 5 : 1
|
|
||||||
Thumb 6 : 1
|
|
||||||
Thumb 7 : 1
|
|
||||||
Thumb 8 : 1
|
|
||||||
Thumb 9 : 1
|
|
||||||
Thumb 10 : 1
|
|
||||||
Thumb 11 : 1
|
|
||||||
Thumb 12 : 1
|
|
||||||
Thumb 13 : 1
|
|
||||||
Thumb 14 : 1
|
|
||||||
Thumb 15 : 1
|
|
||||||
Thumb 16 : 1
|
|
||||||
Thumb 17 : 1
|
|
||||||
Thumb 18 : 1
|
|
||||||
Thumb 19 : 1
|
|
||||||
Thumb 20 : 1
|
|
||||||
Thumb 21 : 1
|
|
||||||
Thumb 22 : 1
|
|
||||||
LineFit 1 : 0
|
|
||||||
LineFit 2 : 0
|
|
||||||
LineFit 3 : 0
|
|
||||||
LineFit 4 : 0
|
|
||||||
LineFit 5 : 0
|
|
||||||
LineFit 6 : 0
|
|
||||||
LineFit 7 : 0
|
|
||||||
LineFit 8 : 0
|
|
||||||
LineFit 9 : 0
|
|
||||||
LineFit 10 : 0
|
|
||||||
LineFit 11 : 0
|
|
||||||
LineFit 12 : 0
|
|
||||||
LineFit 13 : 0
|
|
||||||
LineFit 14 : 0
|
|
||||||
LineFit 15 : 0
|
|
||||||
LineFit 16 : 0
|
|
||||||
LineFit 17 : 0
|
|
||||||
LineFit 18 : 0
|
|
||||||
LineFit 19 : 0
|
|
||||||
LineFit 20 : 0
|
|
||||||
LineFit 21 : 0
|
|
||||||
LineFit 22 : 0
|
|
||||||
PlaneFit 1 : 0
|
|
||||||
PlaneFit 2 : 0
|
|
||||||
PlaneFit 3 : 0
|
|
||||||
PlaneFit 4 : 0
|
|
||||||
PlaneFit 5 : 0
|
|
||||||
PlaneFit 6 : 0
|
|
||||||
PlaneFit 7 : 0
|
|
||||||
PlaneFit 8 : 0
|
|
||||||
PlaneFit 9 : 0
|
|
||||||
PlaneFit 10 : 0
|
|
||||||
PlaneFit 11 : 0
|
|
||||||
PlaneFit 12 : 0
|
|
||||||
PlaneFit 13 : 0
|
|
||||||
PlaneFit 14 : 0
|
|
||||||
PlaneFit 15 : 0
|
|
||||||
PlaneFit 16 : 0
|
|
||||||
PlaneFit 17 : 0
|
|
||||||
PlaneFit 18 : 0
|
|
||||||
PlaneFit 19 : 0
|
|
||||||
PlaneFit 20 : 0
|
|
||||||
PlaneFit 21 : 0
|
|
||||||
PlaneFit 22 : 0
|
|
||||||
Inverted 1 : 1
|
|
||||||
Inverted 2 : 1
|
|
||||||
Inverted 3 : 1
|
|
||||||
Inverted 4 : 1
|
|
||||||
Inverted 5 : 1
|
|
||||||
Inverted 6 : 1
|
|
||||||
Inverted 7 : 1
|
|
||||||
Inverted 8 : 1
|
|
||||||
Inverted 9 : 1
|
|
||||||
Inverted 10 : 1
|
|
||||||
Inverted 11 : 1
|
|
||||||
Inverted 12 : 1
|
|
||||||
Inverted 13 : 1
|
|
||||||
Inverted 14 : 1
|
|
||||||
Inverted 15 : 1
|
|
||||||
Inverted 16 : 1
|
|
||||||
Inverted 17 : 1
|
|
||||||
Inverted 18 : 1
|
|
||||||
Inverted 19 : 1
|
|
||||||
Inverted 20 : 1
|
|
||||||
Inverted 21 : 1
|
|
||||||
Inverted 22 : 1
|
|
||||||
Color 1 : BluePurple
|
|
||||||
Color 2 : PurpleBlue
|
|
||||||
Color 3 : Grey
|
|
||||||
Color 4 : Grey
|
|
||||||
Color 5 : PupleRed
|
|
||||||
Color 6 : RedPurple
|
|
||||||
Color 7 : Grey
|
|
||||||
Color 8 : Grey
|
|
||||||
Color 9 : OrangeRed
|
|
||||||
Color 10 : PurpleBlueGreen
|
|
||||||
Color 11 : Red
|
|
||||||
Color 12 : Red
|
|
||||||
Color 13 : Gnuplot
|
|
||||||
Color 14 : Gnuplot2
|
|
||||||
Color 15 : ReiGreen
|
|
||||||
Color 16 : ReiGreen
|
|
||||||
Color 17 : Blue2
|
|
||||||
Color 18 : Blue2
|
|
||||||
Color 19 : Blue
|
|
||||||
Color 20 : Blue
|
|
||||||
Color 21 : Ocean
|
|
||||||
Color 22 : Ocean
|
|
||||||
@@ -1,166 +0,0 @@
|
|||||||
#
|
|
||||||
#
|
|
||||||
# This is the config file of the 'Advanced SCALA contact sheets' tool
|
|
||||||
#
|
|
||||||
# Don't make any changes
|
|
||||||
#
|
|
||||||
|
|
||||||
|
|
||||||
Last directory: /media/cle/Daten/Data/X -- 2016/rawdata/sample_Pd-HOPG/Ceria_10ML_Pd_annealed_Ethylene_2016-01-03
|
|
||||||
PDF Path: /media/cle/Daten/Data/X -- 2016/rawdata/sample_Pd-HOPG/Ficken
|
|
||||||
|
|
||||||
|
|
||||||
Parameters
|
|
||||||
==========
|
|
||||||
Rows : 6
|
|
||||||
Columns : 4
|
|
||||||
Rms : 1.3
|
|
||||||
Image resolution : 100
|
|
||||||
Jpeg quality : 40
|
|
||||||
X text position : 0
|
|
||||||
Y text position : 0
|
|
||||||
Text size : 13
|
|
||||||
Dx of text : 0
|
|
||||||
Font : Arial
|
|
||||||
Date : 1
|
|
||||||
Size in nm : 1
|
|
||||||
Size in px : 1
|
|
||||||
Offset : 1
|
|
||||||
Voltage : 1
|
|
||||||
Feedback : 1
|
|
||||||
Gain : 1
|
|
||||||
Speed : 1
|
|
||||||
Amplitude : 1
|
|
||||||
Angle : 1
|
|
||||||
Deleting thumbs before : 0
|
|
||||||
Deleting thumbs after : 0
|
|
||||||
Extra directories : 0
|
|
||||||
Replace pdfs : 1
|
|
||||||
Subdirs : 0
|
|
||||||
Spektral Options : 1
|
|
||||||
Format Options : 0
|
|
||||||
Peek Options : 0
|
|
||||||
Minimum on zero Options: 0
|
|
||||||
Master directory :
|
|
||||||
Filename :
|
|
||||||
Color : ReiGreen
|
|
||||||
File extension : _noline
|
|
||||||
Direction : 0
|
|
||||||
Linefit : 3
|
|
||||||
Planefit : 3
|
|
||||||
AddChannel : 17
|
|
||||||
ChannelNumber : 3
|
|
||||||
Tooltips : 0
|
|
||||||
Channelname 1 : FN
|
|
||||||
Channelname 2 : FL
|
|
||||||
Channelname 3 : I
|
|
||||||
Thumb 1 : 1
|
|
||||||
Thumb 2 : 1
|
|
||||||
Thumb 3 : 1
|
|
||||||
Thumb 4 : 1
|
|
||||||
Thumb 5 : 1
|
|
||||||
Thumb 6 : 1
|
|
||||||
Thumb 7 : 1
|
|
||||||
Thumb 8 : 1
|
|
||||||
Thumb 9 : 1
|
|
||||||
Thumb 10 : 1
|
|
||||||
Thumb 11 : 1
|
|
||||||
Thumb 12 : 1
|
|
||||||
Thumb 13 : 1
|
|
||||||
Thumb 14 : 1
|
|
||||||
Thumb 15 : 1
|
|
||||||
Thumb 16 : 1
|
|
||||||
Thumb 17 : 1
|
|
||||||
Thumb 18 : 1
|
|
||||||
Thumb 19 : 1
|
|
||||||
Thumb 20 : 1
|
|
||||||
Thumb 21 : 1
|
|
||||||
Thumb 22 : 1
|
|
||||||
LineFit 1 : 0
|
|
||||||
LineFit 2 : 0
|
|
||||||
LineFit 3 : 0
|
|
||||||
LineFit 4 : 0
|
|
||||||
LineFit 5 : 0
|
|
||||||
LineFit 6 : 0
|
|
||||||
LineFit 7 : 0
|
|
||||||
LineFit 8 : 0
|
|
||||||
LineFit 9 : 0
|
|
||||||
LineFit 10 : 0
|
|
||||||
LineFit 11 : 0
|
|
||||||
LineFit 12 : 0
|
|
||||||
LineFit 13 : 0
|
|
||||||
LineFit 14 : 0
|
|
||||||
LineFit 15 : 0
|
|
||||||
LineFit 16 : 0
|
|
||||||
LineFit 17 : 0
|
|
||||||
LineFit 18 : 0
|
|
||||||
LineFit 19 : 0
|
|
||||||
LineFit 20 : 0
|
|
||||||
LineFit 21 : 0
|
|
||||||
LineFit 22 : 0
|
|
||||||
PlaneFit 1 : 1
|
|
||||||
PlaneFit 2 : 1
|
|
||||||
PlaneFit 3 : 0
|
|
||||||
PlaneFit 4 : 0
|
|
||||||
PlaneFit 5 : 0
|
|
||||||
PlaneFit 6 : 0
|
|
||||||
PlaneFit 7 : 0
|
|
||||||
PlaneFit 8 : 0
|
|
||||||
PlaneFit 9 : 0
|
|
||||||
PlaneFit 10 : 0
|
|
||||||
PlaneFit 11 : 0
|
|
||||||
PlaneFit 12 : 0
|
|
||||||
PlaneFit 13 : 1
|
|
||||||
PlaneFit 14 : 1
|
|
||||||
PlaneFit 15 : 0
|
|
||||||
PlaneFit 16 : 0
|
|
||||||
PlaneFit 17 : 0
|
|
||||||
PlaneFit 18 : 0
|
|
||||||
PlaneFit 19 : 0
|
|
||||||
PlaneFit 20 : 0
|
|
||||||
PlaneFit 21 : 0
|
|
||||||
PlaneFit 22 : 0
|
|
||||||
Inverted 1 : 0
|
|
||||||
Inverted 2 : 0
|
|
||||||
Inverted 3 : 1
|
|
||||||
Inverted 4 : 1
|
|
||||||
Inverted 5 : 0
|
|
||||||
Inverted 6 : 0
|
|
||||||
Inverted 7 : 0
|
|
||||||
Inverted 8 : 0
|
|
||||||
Inverted 9 : 0
|
|
||||||
Inverted 10 : 0
|
|
||||||
Inverted 11 : 0
|
|
||||||
Inverted 12 : 0
|
|
||||||
Inverted 13 : 1
|
|
||||||
Inverted 14 : 1
|
|
||||||
Inverted 15 : 0
|
|
||||||
Inverted 16 : 0
|
|
||||||
Inverted 17 : 0
|
|
||||||
Inverted 18 : 0
|
|
||||||
Inverted 19 : 0
|
|
||||||
Inverted 20 : 0
|
|
||||||
Inverted 21 : 0
|
|
||||||
Inverted 22 : 0
|
|
||||||
Color 1 : Gist_heat
|
|
||||||
Color 2 : Gist_heat
|
|
||||||
Color 3 : Grey
|
|
||||||
Color 4 : Grey
|
|
||||||
Color 5 : AFMhot
|
|
||||||
Color 6 : AFMhot
|
|
||||||
Color 7 : Grey
|
|
||||||
Color 8 : Grey
|
|
||||||
Color 9 : Grey
|
|
||||||
Color 10 : Grey
|
|
||||||
Color 11 : Red
|
|
||||||
Color 12 : Red
|
|
||||||
Color 13 : Blue2
|
|
||||||
Color 14 : Blue2
|
|
||||||
Color 15 : ReiGreen
|
|
||||||
Color 16 : ReiGreen
|
|
||||||
Color 17 : Blue2
|
|
||||||
Color 18 : Blue2
|
|
||||||
Color 19 : Blue
|
|
||||||
Color 20 : Blue
|
|
||||||
Color 21 : Ocean
|
|
||||||
Color 22 : Ocean
|
|
||||||
@@ -1,568 +0,0 @@
|
|||||||
# ##### BEGIN GPL LICENSE BLOCK #####
|
|
||||||
#
|
|
||||||
# This program is free software; you can redistribute it and/or
|
|
||||||
# modify it under the terms of the GNU General Public License
|
|
||||||
# as published by the Free Software Foundation; either version 2
|
|
||||||
# of the License, or (at your option) any later version.
|
|
||||||
#
|
|
||||||
# This program is distributed in the hope that it will be useful,
|
|
||||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
||||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
||||||
# GNU General Public License for more details.
|
|
||||||
#
|
|
||||||
# You should have received a copy of the GNU General Public License
|
|
||||||
# along with this program; if not, write to the Free Software Foundation,
|
|
||||||
# Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
|
|
||||||
#
|
|
||||||
# ##### END GPL LICENSE BLOCK #####
|
|
||||||
#
|
|
||||||
# This is part of the python program 'AFM_thumbs'. Please, read the
|
|
||||||
# full licence text and other comments in the file 'AFM_thumbs.py'
|
|
||||||
#
|
|
||||||
# Dr. Clemens Barth (barth@root-1.de), project manager.
|
|
||||||
#
|
|
||||||
# DO NOT REMOVE THIS PREAMBLE !!!
|
|
||||||
#
|
|
||||||
|
|
||||||
|
|
||||||
#
|
|
||||||
#
|
|
||||||
# __________ Change the name and path of the config file ___________ from here
|
|
||||||
#
|
|
||||||
#
|
|
||||||
#
|
|
||||||
globvar_configfile = "Config_AFM_thumbs.conf"
|
|
||||||
globvar_configfile_path = "./AFM_thumbs/"
|
|
||||||
|
|
||||||
"""
|
|
||||||
Example for Linux
|
|
||||||
globvar_configfile_path = "/home/user/bin/AFM_thumbs/"
|
|
||||||
globvar_configfile = "Config_AFM_thumbs.conf"
|
|
||||||
|
|
||||||
Example for Windows
|
|
||||||
globvar_configfile_path = "C:\Users\Username\Desktop\AFmThumbnails\" \
|
|
||||||
"AFM_thumbs"
|
|
||||||
globvar_configfile = "Config_AFM_thumbs.conf"
|
|
||||||
"""
|
|
||||||
#
|
|
||||||
#
|
|
||||||
#
|
|
||||||
# _____________________________________________________________________ to here
|
|
||||||
#
|
|
||||||
#
|
|
||||||
#
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# ____________________________________________________________ Global variables
|
|
||||||
|
|
||||||
# DO NOT CHANGE ANYTHING BELOW, OTHERWISE YOU KNOW WHAT TO DO !
|
|
||||||
|
|
||||||
import time
|
|
||||||
|
|
||||||
globvar_year = "2016-01-15"
|
|
||||||
globvar_version = "2.2"
|
|
||||||
|
|
||||||
globvar_spaces = " "
|
|
||||||
globvar_name = "AFM thumbs v" + globvar_version
|
|
||||||
globvar_bar_title = (globvar_name + " " +
|
|
||||||
globvar_year)
|
|
||||||
globvar_note = ("Coordinated by:\n\nClemens Barth\n" +
|
|
||||||
"(barth@root-1.de)\n\n" +
|
|
||||||
" and\n\n" +
|
|
||||||
"Niklas Rethmann (nrethmann@uni-osnabrueck.de)\n\n"+
|
|
||||||
globvar_year + "\n\n"
|
|
||||||
"www.root-1.de")
|
|
||||||
globvar_console = ("\n\n"+
|
|
||||||
globvar_spaces +
|
|
||||||
globvar_name +
|
|
||||||
"" +
|
|
||||||
globvar_year + "\n" +
|
|
||||||
globvar_spaces + "www.root-1.de\n" +
|
|
||||||
globvar_spaces + "Date: " +
|
|
||||||
time.strftime("%d-%m-%Y") +
|
|
||||||
", Time: " +
|
|
||||||
time.strftime("%H:%M:%S"))
|
|
||||||
|
|
||||||
globvar_python_directory = "AFM_thumbs"
|
|
||||||
globvar_default_config = "Config_default.conf"
|
|
||||||
|
|
||||||
globvar_thumb_size_x = 5.0
|
|
||||||
globvar_thumb_size_y = 5.0
|
|
||||||
globvar_thumb_text_width = 50
|
|
||||||
|
|
||||||
globvar_timepassed_1 = ("\n" +
|
|
||||||
globvar_spaces +
|
|
||||||
"Overall passed time: ")
|
|
||||||
globvar_timepassed_2 = "--- %d days --- %d hours --- %d minutes " + \
|
|
||||||
"--- %0.3f seconds ---\n\n"
|
|
||||||
|
|
||||||
# _______________________________________________________________ Omicron SCALA
|
|
||||||
|
|
||||||
Omicron_SCALA_must_exist = ".par"
|
|
||||||
Omicron_SCALA_forward = ".tf"
|
|
||||||
Omicron_SCALA_backward = ".tb"
|
|
||||||
|
|
||||||
# ____________________________________________________________ Nanotec DULCINEA
|
|
||||||
|
|
||||||
Nanotec_DULCINEA_must_exist = ".f.top"
|
|
||||||
Nanotec_DULCINEA_forward = ".f."
|
|
||||||
Nanotec_DULCINEA_backward = ".b."
|
|
||||||
Nanotec_DULCINEA_suffix = ["f.top","f.ch4","f.ch5","f.ch6","f.ch7","f.ch8",
|
|
||||||
"b.top","b.ch4","b.ch5","b.ch6","b.ch7","b.ch8",
|
|
||||||
".f.1st.Auxfeed", ".f.2nd.Auxfeed",
|
|
||||||
".b.1st.Auxfeed", ".b.2nd.Auxfeed"]
|
|
||||||
|
|
||||||
# _________________________________________________________________________ RHK
|
|
||||||
|
|
||||||
RHK_must_exist = [".SM4", ".sm4"]
|
|
||||||
RHK_all_directions = ["all", "All", "ALL", "A", "a"]
|
|
||||||
RHK_forward_direction = ["forward", "Forward", "FORWARD", "for",
|
|
||||||
"For", "FOR", "f", "F"]
|
|
||||||
RHK_backward_direction = ["backward", "Backward", "BACKWARD",
|
|
||||||
"back", "Back", "BACK", "b", "B"]
|
|
||||||
|
|
||||||
|
|
||||||
RHK_message_direction = " --- Some RHK files could be detected! ---\n\n" \
|
|
||||||
"Choose scan direction: (f)orward" \
|
|
||||||
", (b)ackward, (a)ll: "
|
|
||||||
# ____________________________________________________________________ Tooltips
|
|
||||||
|
|
||||||
# Arrangement
|
|
||||||
TT_n_col = "Number of images in a column \n\n\
|
|
||||||
This option lets you specific how \n\
|
|
||||||
many images have to be in a column \n\n"
|
|
||||||
|
|
||||||
TT_n_row = "Number of images in arow \n\n\
|
|
||||||
This option lets you specific how \n\
|
|
||||||
many images have to be in a row \n\n"
|
|
||||||
|
|
||||||
TT_rms = "Contrast (times rms value) \n\n\
|
|
||||||
This option lets you specific the \n\
|
|
||||||
contrast of the images"
|
|
||||||
|
|
||||||
TT_res = "Image resolution factor (in percent) \n\n\
|
|
||||||
This option lets you specific the \n\
|
|
||||||
resolution of the images"
|
|
||||||
|
|
||||||
TT_qual = "Image quality \n\n\
|
|
||||||
This option lets you specific the \n\
|
|
||||||
quality of the images"
|
|
||||||
|
|
||||||
# Position
|
|
||||||
TT_size = "Font size \n\n\
|
|
||||||
This option lets you specific the \n\
|
|
||||||
font size of the image text"
|
|
||||||
|
|
||||||
TT_dx_pos = "dX position (in percent) \n\n\
|
|
||||||
This option lets you shift the \n\
|
|
||||||
image text left or right"
|
|
||||||
|
|
||||||
TT_dy_pos = "dY position (in percent) \n\n\
|
|
||||||
This option lets you shift the \n\
|
|
||||||
image text up or down"
|
|
||||||
|
|
||||||
TT_dw = "dWidth of text (in characters) \n\n\
|
|
||||||
This option lets you specific the \n\
|
|
||||||
width of the image text."
|
|
||||||
|
|
||||||
# Specification
|
|
||||||
TT_file_ex = "This option lets you specific which \n\
|
|
||||||
format should be considered"
|
|
||||||
|
|
||||||
TT_master_dir = "This option lets you specific which \n\
|
|
||||||
folders should be considered. \n\
|
|
||||||
Should only be used together with the \"All sub-directories\" option"
|
|
||||||
|
|
||||||
TT_filename = "This option lets you specific which \n\
|
|
||||||
files should be considered."
|
|
||||||
|
|
||||||
# Param
|
|
||||||
TT_date = "Include date and time \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_size_nm = "Include size in nanometer \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_size_px = "Include size in pixel \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_off = "Include offset in nanometer \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_vol = "Includes voltage (Volt) \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_feed = "Includes feedback\n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_loop = "Includes loop gain\n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_speed = "Include acquisition speed in s/line \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_amp = "Include amplitude\n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
TT_angle = "Include angle in degree \n\
|
|
||||||
in the image text"
|
|
||||||
|
|
||||||
# Other
|
|
||||||
TT_thumb_before = "Delete thumbs before all \n\n\
|
|
||||||
With this option enabled, the thumbnail directory \n\
|
|
||||||
will be deleted before a pdf thumbnail is created."
|
|
||||||
|
|
||||||
TT_thumb_after = "Delete thumbs after all \n\n\
|
|
||||||
With this option enabled, the thumbnail directory \n\
|
|
||||||
will be deleted after a pdf thumbnail has been created."
|
|
||||||
|
|
||||||
TT_extra_dir = "Extra directory \n\n\
|
|
||||||
Creates extra WSxM and Gwyddion directories. \n\
|
|
||||||
Two new directories are created in the directory one level above.\n\
|
|
||||||
The directory structure(s) of the AFM data is(are) conserved."
|
|
||||||
|
|
||||||
TT_pdfs = "Replace existing pdfs \n\n\
|
|
||||||
Existing pdf files are replaced by new ones."
|
|
||||||
|
|
||||||
TT_subdirs = "All sub-directories \n\n\
|
|
||||||
All subdirectories of the selected directory (Button 'Choose directory')\n\
|
|
||||||
are also considered. The respective pdf files are placed into the\n\
|
|
||||||
directory one level above."
|
|
||||||
|
|
||||||
TT_png = "Create images in png format \n\n\
|
|
||||||
Change the image format of the thumbnails from jpeg to png."
|
|
||||||
|
|
||||||
TT_spektral = " Include spectras \n\n\
|
|
||||||
With this option images of spectra are included\n\
|
|
||||||
into the pdf file."
|
|
||||||
|
|
||||||
TT_peek = " Set color scale to peek-peek \n\n\
|
|
||||||
This option permits setting the color scale of the \n\
|
|
||||||
images to peek-to-peek values."
|
|
||||||
|
|
||||||
TT_minimum_on_zero = " Set minimum value on zero \n\n\
|
|
||||||
This option permits setting the minimum value of \n\
|
|
||||||
the images onto zero."
|
|
||||||
|
|
||||||
TT_Reich = "Reichling Special Options \n\n\
|
|
||||||
This option triggers the following features: \n\
|
|
||||||
- Colour for Kelvin images is set to gray \n\
|
|
||||||
- One df image is inverted"
|
|
||||||
|
|
||||||
# _____________________________________________________________________ For all
|
|
||||||
|
|
||||||
ID_topography = r"[Tt]op(ograph(y|ie))?|TOP(OGRAPH(Y|IE))?|[Zz]"
|
|
||||||
ID_amplitude = r"[Aa]mplitude|AMPLITUDE|[Aa]mpl?\.?|AMPL?\.?"
|
|
||||||
ID_kelvin = r"[Kk]el(vin)?|KEL(VIN)?"
|
|
||||||
ID_kelvin_err = r"[Ee]rr(or)?|ERR(OR)?|[Ll]1[Xx]"
|
|
||||||
ID_df = r"[Dd][Ff]"
|
|
||||||
ID_df_fil = r"[Ff]iltered|FILTERED"
|
|
||||||
ID_dissipation = r"[Dd](issipation)?|DISSIPATION|[Dd]amp|DAMP|[Pp][Ll][Ll]"
|
|
||||||
ID_excitation = r"[Ee]xcitation|EXCITATION"
|
|
||||||
ID_ext1 = r"[Ee]xt(ernal)?( )?1|[Ee]XT(ERNALl)?( )?1"
|
|
||||||
ID_ext2 = r"[Ee]xt(ernal)?( )?2|[Ee]XT(ERNALl)?( )?2"
|
|
||||||
ID_phase = r"[Pp]ha(se)?|PHA(SE)?"
|
|
||||||
|
|
||||||
ID_list = [ID_topography, ID_amplitude, ID_kelvin, ID_kelvin_err, ID_df,
|
|
||||||
ID_df_fil, ID_dissipation, ID_excitation, ID_ext1, ID_ext2, ID_phase]
|
|
||||||
|
|
||||||
ID_abbreviations = {"Topography" : "Z", "filtered df":"df_fil", "Amplitude":"A",
|
|
||||||
"Dissipation": "D", "Kelvin Error": "KPFM_err",
|
|
||||||
"Ext 1": "Ext1", "Ext 2": "Ext2", "Excitation": "A_ext",
|
|
||||||
"Phase": "Phase", "Kelvin": "KPFM", "DF_DIG": "df",
|
|
||||||
"EXT": "Ext", "EXT1": "Ext1", "EXT2": "Ext2"}
|
|
||||||
|
|
||||||
# ______________________________________________________________________ Colors
|
|
||||||
|
|
||||||
# Colors: see http://matplotlib.org/examples/color/colormaps_reference.html
|
|
||||||
# Note that many other colours still exist, pre-defined!
|
|
||||||
|
|
||||||
globvar_ttk_Combobox = 10
|
|
||||||
|
|
||||||
globvar_color_options = ["Grey", "Red", "Red2", "Blue", "Blue2", "Green",
|
|
||||||
"ReiGreen", "Yellow", "Gold",
|
|
||||||
"Orange", "Purples",
|
|
||||||
"BlueGreen", "GreenBlu",
|
|
||||||
"BluePurple", "PurpleBlue", "PupleRed", "RedPurple",
|
|
||||||
"OrangeRed",
|
|
||||||
"PurpleBlueGreen",
|
|
||||||
"Gnuplot", "Gnuplot2", "Ocean", "Rainbow",
|
|
||||||
"Gist_rainbow", "HSV", "Gist_stern", "Jet",
|
|
||||||
"Hot", "AFMhot", "Bone", "Gist_heat"]
|
|
||||||
|
|
||||||
# This red is very nice and also ...
|
|
||||||
Color_Red = {'red': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.6, 0.6),
|
|
||||||
(0.666, 1.0, 1.0),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'green': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.0, 0.0),
|
|
||||||
(0.666, 0.0, 0.0),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'blue': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.0, 0.0),
|
|
||||||
(0.666, 0.0, 0.0),
|
|
||||||
(1.0, 1.0, 1.0))}
|
|
||||||
|
|
||||||
# ... this yellow, ...
|
|
||||||
Color_Yellow = {'red': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.7, 0.7),
|
|
||||||
(0.666, 1.0, 1.0),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'green': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.8, 0.8),
|
|
||||||
(0.666, 1.0, 1.0),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'blue': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.0, 0.0),
|
|
||||||
(0.666, 0.0, 0.0),
|
|
||||||
(1.0, 1.0, 1.0))}
|
|
||||||
|
|
||||||
# ... this blue, ...
|
|
||||||
Color_Blue = {'red': ((0.0, 0.0, 0.0),
|
|
||||||
(0.3, 0.0, 0.0),
|
|
||||||
(0.7, 0.9, 0.9),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'green': ((0.0, 0.0, 0.0),
|
|
||||||
(0.3, 0.0, 0.0),
|
|
||||||
(0.7, 0.9, 0.9),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'blue': ((0.0, 0.0, 0.0),
|
|
||||||
(0.7, 0.9, 0.9),
|
|
||||||
(1.0, 1.0, 1.0))}
|
|
||||||
|
|
||||||
# ... gold and of course ...
|
|
||||||
Color_Gold = {'red': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.545098039216, 0.545098039216),
|
|
||||||
(0.666, 0.803921568627, 0.803921568627),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'green': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.458823529412, 0.458823529412),
|
|
||||||
(0.666, 0.678431372549, 0.678431372549),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'blue': ((0.0, 0.0, 0.0),
|
|
||||||
(0.333, 0.0, 0.0),
|
|
||||||
(0.666, 0.0, 0.0),
|
|
||||||
(1.0, 1.0, 1.0))}
|
|
||||||
|
|
||||||
# ... the green colour from the Michael Reichling group.
|
|
||||||
Color_ReiGreen = {'red': ((0.0, 0.0, 0.0),
|
|
||||||
(0.381166, 0.0, 0.0),
|
|
||||||
(0.672646, 0.471014, 0.471014),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'green': ((0.0, 0.0, 0.0),
|
|
||||||
(0.381166, 0.381166, 0.381166),
|
|
||||||
(0.672646, 0.672646, 0.672646),
|
|
||||||
(1.0, 1.0, 1.0)),
|
|
||||||
'blue': ((0.0, 0.0, 0.0),
|
|
||||||
(0.381166, 0.0, 0.0),
|
|
||||||
(0.672646, 0.0, 0.0),
|
|
||||||
(1.0, 1.0, 1.0))}
|
|
||||||
|
|
||||||
Color_list = ["Greys_r", "Reds_r", Color_Red, "Blues_r", Color_Blue, "Greens_r",
|
|
||||||
Color_ReiGreen, Color_Yellow, Color_Gold,
|
|
||||||
"Oranges_r", "Purples_r",
|
|
||||||
"BuGn_r", "GnBu_r",
|
|
||||||
"BuPu_r", "PuBu_r", "PuRd_r", "RdPu_r",
|
|
||||||
"OrRd_r",
|
|
||||||
"PuBuGn_r",
|
|
||||||
"gnuplot", "gnuplot2", "ocean", "rainbow",
|
|
||||||
"gist_rainbow", "hsv", "gist_stern", "jet",
|
|
||||||
"hot", "afmhot", "bone", "gist_heat"]
|
|
||||||
|
|
||||||
globvar_color_dict = {name:color for name, color in \
|
|
||||||
zip(globvar_color_options, Color_list)}
|
|
||||||
|
|
||||||
# ___________________________________________________________________ Fonts
|
|
||||||
|
|
||||||
globvar_fonts = ['Courier', 'Courier New', 'Arial', 'FreeSans']
|
|
||||||
# ___________________________________________________________________ Classes
|
|
||||||
|
|
||||||
class CLASSparameters(object):
|
|
||||||
def __init__(self, row, col, rms, res, font,
|
|
||||||
thumbs_before, thumbs_after, peek, minimum_on_zero,
|
|
||||||
png, date, sizenm,
|
|
||||||
sizepx, offset, voltage, feedback, gain,
|
|
||||||
speed, ampl, text_block, text_block_height,
|
|
||||||
text_size, pdfs, text_x, text_y, angle,
|
|
||||||
extra_direct, extension, masterdir, filename, jpeg,
|
|
||||||
channel_names, thumbs, line_fit, plane_fit, invert,
|
|
||||||
colors, geometry_x, geometry_y, spektra):
|
|
||||||
self.row = row
|
|
||||||
self.col = col
|
|
||||||
self.rms = rms
|
|
||||||
self.res = res
|
|
||||||
self.font = font
|
|
||||||
self.thumbs_before = thumbs_before
|
|
||||||
self.thumbs_after = thumbs_after
|
|
||||||
self.peek = peek
|
|
||||||
self.minimum_on_zero = minimum_on_zero
|
|
||||||
self.png = png
|
|
||||||
self.date = date
|
|
||||||
self.sizenm = sizenm
|
|
||||||
self.sizepx = sizepx
|
|
||||||
self.offset = offset
|
|
||||||
self.voltage = voltage
|
|
||||||
self.feedback = feedback
|
|
||||||
self.gain = gain
|
|
||||||
self.speed = speed
|
|
||||||
self.ampl = ampl
|
|
||||||
self.text_block = text_block
|
|
||||||
self.text_block_height = text_block_height
|
|
||||||
self.text_size = text_size
|
|
||||||
self.pdfs = pdfs
|
|
||||||
self.text_x = text_x
|
|
||||||
self.text_y = text_y
|
|
||||||
self.angle = angle
|
|
||||||
self.extra_direct = extra_direct
|
|
||||||
self.extension = extension
|
|
||||||
self.masterdir = masterdir
|
|
||||||
self.filename = filename
|
|
||||||
self.jpeg = jpeg
|
|
||||||
self.channel_names = channel_names
|
|
||||||
self.thumbs = thumbs
|
|
||||||
self.line_fit = line_fit
|
|
||||||
self.plane_fit = plane_fit
|
|
||||||
self.invert = invert
|
|
||||||
self.colors = colors
|
|
||||||
self.geometry_x = geometry_x
|
|
||||||
self.geometry_y = geometry_y
|
|
||||||
self.spektra = spektra
|
|
||||||
|
|
||||||
class CLASSdir(object):
|
|
||||||
def __init__(self, working_directory, pdf_path,
|
|
||||||
thumbnail_directory, data_directory_name):
|
|
||||||
self.working_directory = working_directory
|
|
||||||
self.pdf_path = pdf_path
|
|
||||||
self.thumbnail_directory = thumbnail_directory
|
|
||||||
self.data_directory_name = data_directory_name
|
|
||||||
|
|
||||||
|
|
||||||
class CLASSdata(object):
|
|
||||||
__slots__ = ('date', 'x_size', 'y_size', 'x_pixel', 'y_pixel',
|
|
||||||
'x_off', 'y_off',
|
|
||||||
'voltage', 'feedback',
|
|
||||||
'gain', 'gain_prop', 'gain_int', 'gain_xy',
|
|
||||||
'gain_signal', 'gain_z',
|
|
||||||
'speed', 'amplitude', 'angle', 'NONE',
|
|
||||||
'datfile', 'channel', 'unit',
|
|
||||||
'z_average', 'z_calibration', 'z_factor', 'z_min',
|
|
||||||
'z_max', 'z_amplitude',
|
|
||||||
'scandir', 'spec_x_unit', 'spec_x_label',
|
|
||||||
'spec_y_unit', 'spec_y_label', 'spec_y_factor',
|
|
||||||
'spec_points', 'spec_feedback', 'spec_acquisition',
|
|
||||||
'spec_delay')
|
|
||||||
def __init__(self, date, x_size, y_size, x_pixel, y_pixel, x_off, y_off,
|
|
||||||
voltage, feedback,
|
|
||||||
gain, gain_prop, gain_int, gain_xy, gain_signal, gain_z,
|
|
||||||
speed, amplitude, angle, NONE,
|
|
||||||
datfile, channel, unit,
|
|
||||||
z_average, z_calibration, z_factor, z_min, z_max, z_amplitude,
|
|
||||||
scandir, spec_x_unit, spec_x_label,
|
|
||||||
spec_y_unit, spec_y_label, spec_y_factor,
|
|
||||||
spec_points, spec_feedback, spec_acquisition, spec_delay):
|
|
||||||
self.date = date
|
|
||||||
self.x_size = x_size
|
|
||||||
self.y_size = y_size
|
|
||||||
self.x_pixel = x_pixel
|
|
||||||
self.y_pixel = y_pixel
|
|
||||||
self.x_off = x_off
|
|
||||||
self.y_off = y_off
|
|
||||||
self.voltage = voltage
|
|
||||||
self.feedback = feedback
|
|
||||||
self.gain = gain # SCALA
|
|
||||||
self.gain_prop = gain_prop # DULCINEA
|
|
||||||
self.gain_int = gain_int # DULCINEA
|
|
||||||
self.gain_xy = gain_xy # DULCINEA
|
|
||||||
self.gain_signal = gain_signal # DULCINEA
|
|
||||||
self.gain_z = gain_z # DULCINEA
|
|
||||||
self.speed = speed
|
|
||||||
self.amplitude = amplitude
|
|
||||||
self.angle = angle
|
|
||||||
self.NONE = NONE # This is a dummy ...
|
|
||||||
# From here to end: lists
|
|
||||||
self.datfile = datfile
|
|
||||||
self.channel = channel
|
|
||||||
self.unit = unit
|
|
||||||
self.z_average = z_average # float, is determined during runtime
|
|
||||||
self.z_calibration = z_calibration
|
|
||||||
self.z_factor = z_factor # DULCINEA, not used so far
|
|
||||||
self.z_amplitude = z_amplitude
|
|
||||||
self.z_min = z_min # DULCINEA, not used so far
|
|
||||||
self.z_max = z_max # DULCINEA, not used so far
|
|
||||||
self.scandir = scandir
|
|
||||||
self.spec_x_unit = spec_x_unit
|
|
||||||
self.spec_x_label = spec_x_label
|
|
||||||
self.spec_y_unit = spec_y_unit
|
|
||||||
self.spec_y_label = spec_y_label
|
|
||||||
self.spec_y_factor = spec_y_factor
|
|
||||||
self.spec_points = spec_points
|
|
||||||
self.spec_feedback = spec_feedback
|
|
||||||
self.spec_acquisition = spec_acquisition
|
|
||||||
self.spec_delay = spec_delay
|
|
||||||
|
|
||||||
|
|
||||||
class CLASSLinalg(object):
|
|
||||||
__slots__ = ('plane_M512', 'plane_M1024',
|
|
||||||
'plane_x_vec512', 'plane_y_vec512',
|
|
||||||
'plane_x_vec1024', 'plane_y_vec1024',
|
|
||||||
'line_M512', 'line_M1024',
|
|
||||||
'line_x_vec512', 'line_x_vec1024')
|
|
||||||
def __init__(self, plane_M512, plane_M1024,
|
|
||||||
plane_x_vec512, plane_y_vec512,
|
|
||||||
plane_x_vec1024, plane_y_vec1024,
|
|
||||||
line_M512, line_M1024,
|
|
||||||
line_x_vec512,line_x_vec1024):
|
|
||||||
self.plane_M512 = plane_M512
|
|
||||||
self.plane_M1024 = plane_M1024
|
|
||||||
self.plane_x_vec512 = plane_x_vec512
|
|
||||||
self.plane_y_vec512 = plane_y_vec512
|
|
||||||
self.plane_x_vec1024 = plane_x_vec1024
|
|
||||||
self.plane_y_vec1024 = plane_y_vec1024
|
|
||||||
self.line_M512 = line_M512
|
|
||||||
self.line_M1024 = line_M1024
|
|
||||||
self.line_x_vec512 = line_x_vec512
|
|
||||||
self.line_x_vec1024 = line_x_vec1024
|
|
||||||
|
|
||||||
|
|
||||||
# The next 2 classes are used specifically for the RHK routine.
|
|
||||||
class CLASSRHK_position_counter(object):
|
|
||||||
def __init__(self, position):
|
|
||||||
self.position = position
|
|
||||||
|
|
||||||
def add(self):
|
|
||||||
self.position += 1
|
|
||||||
|
|
||||||
class CLASSRHK_direction_request(object):
|
|
||||||
def __init__(self, direction = all):
|
|
||||||
self.direction = direction
|
|
||||||
|
|
||||||
class CLASSRHK_true(object):
|
|
||||||
def __init__(self, true = False):
|
|
||||||
self.true = true
|
|
||||||
|
|
||||||
|
|
||||||
globvar_LINALG = CLASSLinalg(None,None,None,None,None,None,None,None,None,None)
|
|
||||||
|
|
||||||
globvar_AFMdata = CLASSdata(None,None,None,None,None,None,None,None,None,None,
|
|
||||||
None,None,None,None,None,None,None,None, None,
|
|
||||||
[],[],[], None, [],[],[],[],[],[],[],
|
|
||||||
[],[],[],[],[],[],[],[])
|
|
||||||
|
|
||||||
globvar_AFMdir = CLASSdir(None,None,None,None)
|
|
||||||
|
|
||||||
globvar_ThumbPara = CLASSparameters(None, None, None, None, None,
|
|
||||||
False, False, False, False, False, False,
|
|
||||||
False, False, False, False, False,
|
|
||||||
False, False, False,
|
|
||||||
0, 0, 0, False, 0, 0, False,
|
|
||||||
False, None, None, None, 0,
|
|
||||||
[], [], [], [], [], [],
|
|
||||||
[], [], None)
|
|
||||||
|
|
||||||
# For RHK
|
|
||||||
RHK_PositionCounter = CLASSRHK_position_counter(None)
|
|
||||||
RHK_special = CLASSRHK_true(False)
|
|
||||||
Reference in New Issue
Block a user